emacs/lisp/org/ob-fortran.el

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;;; ob-fortran.el --- org-babel functions for fortran
;; Copyright (C) 2011-2015 Free Software Foundation, Inc.
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;; Authors: Sergey Litvinov
;; Eric Schulte
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;; Keywords: literate programming, reproducible research, fortran
;; Homepage: http://orgmode.org
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;; This file is part of GNU Emacs.
;;
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;; GNU Emacs is free software: you can redistribute it and/or modify
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;; it under the terms of the GNU General Public License as published by
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;; the Free Software Foundation, either version 3 of the License, or
;; (at your option) any later version.
;; GNU Emacs is distributed in the hope that it will be useful,
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;; but WITHOUT ANY WARRANTY; without even the implied warranty of
;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;; GNU General Public License for more details.
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;; You should have received a copy of the GNU General Public License
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;; along with GNU Emacs. If not, see <http://www.gnu.org/licenses/>.
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;;; Commentary:
;; Org-Babel support for evaluating fortran code.
;;; Code:
(require 'ob)
(require 'cc-mode)
(declare-function org-entry-get "org"
(pom property &optional inherit literal-nil))
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(declare-function org-every "org" (pred seq))
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(defvar org-babel-tangle-lang-exts)
(add-to-list 'org-babel-tangle-lang-exts '("fortran" . "F90"))
(defvar org-babel-default-header-args:fortran '())
(defvar org-babel-fortran-compiler "gfortran"
"fortran command used to compile a fortran source code file into an
executable.")
(defun org-babel-execute:fortran (body params)
"This function should only be called by `org-babel-execute:fortran'"
(let* ((tmp-src-file (org-babel-temp-file "fortran-src-" ".F90"))
(tmp-bin-file (org-babel-temp-file "fortran-bin-" org-babel-exeext))
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(cmdline (cdr (assoc :cmdline params)))
(flags (cdr (assoc :flags params)))
(full-body (org-babel-expand-body:fortran body params))
(compile
(progn
(with-temp-file tmp-src-file (insert full-body))
(org-babel-eval
(format "%s -o %s %s %s"
org-babel-fortran-compiler
(org-babel-process-file-name tmp-bin-file)
(mapconcat 'identity
(if (listp flags) flags (list flags)) " ")
(org-babel-process-file-name tmp-src-file)) ""))))
Address some byte-compiler warnings. * lisp/org/ob-abc.el (org-babel-expand-body:abc): Use dolist. (org-babel-execute:abc): Fix regexp quoting. * lisp/org/ob-calc.el (org--var-syms): Rename from `var-syms'. * lisp/org/ob-lilypond.el (ly-compile-lilyfile): Remove redundant let-binding. * lisp/org/ob-table.el (sbe): Move debug declaration. * lisp/org/org-clock.el (org--msg-extra): Rename from `msg-extra'. * lisp/org/org.el (org-version): Avoid var name starting with _. (org-inhibit-startup, org-called-with-limited-levels) (org-link-search-inhibit-query, org-time-was-given) (org-end-time-was-given, org-def, org-defdecode, org-with-time): * lisp/org/org-colview.el (org-agenda-overriding-columns-format): * lisp/org/org-agenda.el (org-agenda-multi, org-depend-tag-blocked) (org-agenda-show-log-scoped): * lisp/org/ob-python.el (py-which-bufname, python-shell-buffer-name): * lisp/org/ob-haskell.el (org-export-copy-to-kill-ring): * lisp/org/ob-exp.el (org-link-search-inhibit-query): * lisp/org/ob-R.el (ess-eval-visibly-p): * lisp/org/ob-core.el (org-src-window-setup): Declare before use. (org-babel-expand-noweb-references): Remove unused `blocks-in-buffer'. * lisp/org/ox-odt.el (org-odt-hfy-face-to-css): * lisp/org/org-src.el (org-src-associate-babel-session, org-src-get-lang-mode): * lisp/org/org-bibtex.el (org-bibtex-get, org-bibtex-ask, org-bibtex) (org-bibtex-check): * lisp/org/ob-tangle.el (org-babel-tangle, org-babel-spec-to-string) (org-babel-tangle-single-block, org-babel-tangle-comment-links): * ob-table.el (sbe): * lisp/org/ob-sqlite.el (org-babel-sqlite-expand-vars): * lisp/org/ob-sql.el (org-babel-sql-expand-vars): * lisp/org/ob-shen.el (org-babel-execute:shen): * lisp/org/ob-sh.el (org-babel-execute:sh, org-babel-sh-evaluate): * lisp/org/ob-scala.el (org-babel-scala-evaluate): * lisp/org/ob-ruby.el (org-babel-ruby-table-or-string) (org-babel-ruby-evaluate): * ob-python.el (org-babel-python-table-or-string) (org-babel-python-evaluate-external-process) (org-babel-python-evaluate-session): * lisp/org/ob-picolisp.el (org-babel-execute:picolisp): * lisp/org/ob-perl.el (org-babel-perl-evaluate): * lisp/org/ob-maxima.el (org-babel-execute:maxima): * lisp/org/ob-lisp.el (org-babel-execute:lisp): * lisp/org/ob-java.el (org-babel-execute:java): * lisp/org/ob-io.el (org-babel-io-evaluate): * ob-haskell.el (org-babel-execute:haskell): * lisp/org/ob-fortran.el (org-babel-execute:fortran): * ob-exp.el (org-babel-exp-code): * lisp/org/ob-emacs-lisp.el (org-babel-execute:emacs-lisp): * lisp/org/ob-ditaa.el (org-babel-execute:ditaa): * ob-core.el (org-babel-execute-src-block, org-babel-sha1-hash) (org-babel-parse-header-arguments, org-babel-reassemble-table) (org-babel-goto-src-block-head, org-babel-mark-block) (org-babel-expand-noweb-references, org-babel-script-escape) (org-babel-process-file-name): * lisp/org/ob-clojure.el (org-babel-execute:clojure): * ob-calc.el (org-babel-execute:calc): * lisp/org/ob-awk.el (org-babel-execute:awk): * ob-abc.el (org-babel-execute:abc): * ob-R.el (org-babel-expand-body:R): * lisp/org/ob-C.el (org-babel-C-execute): Avoid deprecated ((lambda) ...).
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(let ((results
(org-babel-trim
(org-babel-eval
(concat tmp-bin-file (if cmdline (concat " " cmdline) "")) ""))))
(org-babel-reassemble-table
(org-babel-result-cond (cdr (assoc :result-params params))
(org-babel-read results)
(let ((tmp-file (org-babel-temp-file "f-")))
(with-temp-file tmp-file (insert results))
(org-babel-import-elisp-from-file tmp-file)))
(org-babel-pick-name
(cdr (assoc :colname-names params)) (cdr (assoc :colnames params)))
(org-babel-pick-name
(cdr (assoc :rowname-names params)) (cdr (assoc :rownames params)))))))
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(defun org-babel-expand-body:fortran (body params)
"Expand a block of fortran or fortran code with org-babel according to
it's header arguments."
(let ((vars (mapcar #'cdr (org-babel-get-header params :var)))
(main-p (not (string= (cdr (assoc :main params)) "no")))
(includes (or (cdr (assoc :includes params))
(org-babel-read (org-entry-get nil "includes" t))))
(defines (org-babel-read
(or (cdr (assoc :defines params))
(org-babel-read (org-entry-get nil "defines" t))))))
(mapconcat 'identity
(list
;; includes
(mapconcat
(lambda (inc) (format "#include %s" inc))
(if (listp includes) includes (list includes)) "\n")
;; defines
(mapconcat
(lambda (inc) (format "#define %s" inc))
(if (listp defines) defines (list defines)) "\n")
;; body
(if main-p
(org-babel-fortran-ensure-main-wrap
(concat
;; variables
(mapconcat 'org-babel-fortran-var-to-fortran vars "\n")
body) params)
body) "\n") "\n")))
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(defun org-babel-fortran-ensure-main-wrap (body params)
"Wrap body in a \"program ... end program\" block if none exists."
(if (string-match "^[ \t]*program[ \t]*.*" (capitalize body))
(let ((vars (mapcar #'cdr (org-babel-get-header params :var))))
Prefer directed to neutral quotes Prefer directed to neutral quotes in docstings and diagnostics. In docstrings, escape apostrophes that would otherwise be translated to curved quotes using the newer, simpler rules. * admin/unidata/unidata-gen.el (unidata-gen-table): * lisp/align.el (align-region): * lisp/allout.el (allout-mode, allout-solicit-alternate-bullet): * lisp/bookmark.el (bookmark-default-annotation-text): * lisp/calc/calc-aent.el (math-read-if, math-read-factor): * lisp/calc/calc-lang.el (math-read-giac-subscr) (math-read-math-subscr): * lisp/calc/calc-misc.el (report-calc-bug): * lisp/calc/calc-prog.el (calc-fix-token-name) (calc-read-parse-table-part): * lisp/cedet/ede/pmake.el (ede-proj-makefile-insert-dist-rules): * lisp/cedet/semantic/complete.el (semantic-displayor-show-request): * lisp/dabbrev.el (dabbrev-expand): * lisp/emacs-lisp/checkdoc.el (checkdoc-this-string-valid-engine): * lisp/emacs-lisp/elint.el (elint-get-top-forms): * lisp/emacs-lisp/lisp-mnt.el (lm-verify): * lisp/emulation/viper-cmd.el (viper-toggle-search-style): * lisp/erc/erc-button.el (erc-nick-popup): * lisp/erc/erc.el (erc-cmd-LOAD, erc-handle-login): * lisp/eshell/em-dirs.el (eshell/cd): * lisp/eshell/em-glob.el (eshell-glob-regexp): * lisp/eshell/em-pred.el (eshell-parse-modifiers): * lisp/eshell/esh-arg.el (eshell-parse-arguments): * lisp/eshell/esh-opt.el (eshell-show-usage): * lisp/files-x.el (modify-file-local-variable): * lisp/filesets.el (filesets-add-buffer, filesets-remove-buffer) (filesets-update-pre010505): * lisp/find-cmd.el (find-generic, find-to-string): * lisp/gnus/auth-source.el (auth-source-netrc-parse-entries): * lisp/gnus/gnus-agent.el (gnus-agent-check-overview-buffer) (gnus-agent-fetch-headers): * lisp/gnus/gnus-int.el (gnus-start-news-server): * lisp/gnus/gnus-registry.el: (gnus-registry--split-fancy-with-parent-internal): * lisp/gnus/gnus-score.el (gnus-summary-increase-score): * lisp/gnus/gnus-start.el (gnus-convert-old-newsrc): * lisp/gnus/gnus-topic.el (gnus-topic-rename): * lisp/gnus/legacy-gnus-agent.el (gnus-agent-unlist-expire-days): * lisp/gnus/nnmairix.el (nnmairix-widget-create-query): * lisp/gnus/spam.el (spam-check-blackholes): * lisp/mail/feedmail.el (feedmail-run-the-queue): * lisp/mpc.el (mpc-playlist-rename): * lisp/net/ange-ftp.el (ange-ftp-shell-command): * lisp/net/mairix.el (mairix-widget-create-query): * lisp/net/tramp-cache.el: * lisp/obsolete/otodo-mode.el (todo-more-important-p): * lisp/obsolete/pgg-gpg.el (pgg-gpg-process-region): * lisp/obsolete/pgg-pgp.el (pgg-pgp-process-region): * lisp/obsolete/pgg-pgp5.el (pgg-pgp5-process-region): * lisp/org/ob-core.el (org-babel-goto-named-src-block) (org-babel-goto-named-result): * lisp/org/ob-fortran.el (org-babel-fortran-ensure-main-wrap): * lisp/org/ob-ref.el (org-babel-ref-resolve): * lisp/org/org-agenda.el (org-agenda-prepare): * lisp/org/org-bibtex.el (org-bibtex-fields): * lisp/org/org-clock.el (org-clock-notify-once-if-expired) (org-clock-resolve): * lisp/org/org-feed.el (org-feed-parse-atom-entry): * lisp/org/org-habit.el (org-habit-parse-todo): * lisp/org/org-mouse.el (org-mouse-popup-global-menu) (org-mouse-context-menu): * lisp/org/org-table.el (org-table-edit-formulas): * lisp/org/ox.el (org-export-async-start): * lisp/play/dunnet.el (dun-score, dun-help, dun-endgame-question) (dun-rooms, dun-endgame-questions): * lisp/progmodes/ada-mode.el (ada-goto-matching-start): * lisp/progmodes/ada-xref.el (ada-find-executable): * lisp/progmodes/antlr-mode.el (antlr-options-alists): * lisp/progmodes/flymake.el (flymake-parse-err-lines) (flymake-start-syntax-check-process): * lisp/progmodes/python.el (python-define-auxiliary-skeleton): * lisp/progmodes/sql.el (sql-comint): * lisp/progmodes/verilog-mode.el (verilog-load-file-at-point): * lisp/server.el (server-get-auth-key): * lisp/subr.el (version-to-list): * lisp/textmodes/reftex-ref.el (reftex-label): * lisp/textmodes/reftex-toc.el (reftex-toc-rename-label): * lisp/vc/ediff-diff.el (ediff-same-contents): * lisp/vc/vc-cvs.el (vc-cvs-mode-line-string): * test/automated/tramp-tests.el (tramp-test33-asynchronous-requests): Use directed rather than neutral quotes in diagnostics.
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(if vars (error "Cannot use :vars if program statement is present"))
body)
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(format "program main\n%s\nend program main\n" body)))
(defun org-babel-prep-session:fortran (session params)
"This function does nothing as fortran is a compiled language with no
support for sessions"
(error "Fortran is a compiled languages -- no support for sessions"))
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(defun org-babel-load-session:fortran (session body params)
"This function does nothing as fortran is a compiled language with no
support for sessions"
(error "Fortran is a compiled languages -- no support for sessions"))
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;; helper functions
(defun org-babel-fortran-var-to-fortran (pair)
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"Convert an elisp val into a string of fortran code specifying a var
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of the same value."
;; TODO list support
(let ((var (car pair))
(val (cdr pair)))
(when (symbolp val)
(setq val (symbol-name val))
(when (= (length val) 1)
(setq val (string-to-char val))))
(cond
((integerp val)
(format "integer, parameter :: %S = %S\n" var val))
((floatp val)
(format "real, parameter :: %S = %S\n" var val))
((or (integerp val))
(format "character, parameter :: %S = '%S'\n" var val))
((stringp val)
(format "character(len=%d), parameter :: %S = '%s'\n"
(length val) var val))
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;; val is a matrix
((and (listp val) (org-every #'listp val))
(format "real, parameter :: %S(%d,%d) = transpose( reshape( %s , (/ %d, %d /) ) )\n"
var (length val) (length (car val))
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(org-babel-fortran-transform-list val)
(length (car val)) (length val)))
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((listp val)
(format "real, parameter :: %S(%d) = %s\n"
var (length val) (org-babel-fortran-transform-list val)))
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(t
(error "the type of parameter %s is not supported by ob-fortran" var)))))
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(defun org-babel-fortran-transform-list (val)
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"Return a fortran representation of enclose syntactic lists."
(if (listp val)
(concat "(/" (mapconcat #'org-babel-fortran-transform-list val ", ") "/)")
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(format "%S" val)))
(provide 'ob-fortran)
;;; ob-fortran.el ends here